USEFUL LINKS

BIOINFORMATICS TOOLS

BLAST: for comparison of a query sequence (DNA or amino acid sequence) with a library or database of sequences.

Clustal Omega: multiple sequence (DNA/Protein) alignment

ExPASy: Bioinformatics resouce portal

HHpred: for protein homology detection and structural modeling

FramePlot: for predicting protein-coding regions in bacterial DNA with a high G + C content.

PKS/NRPS analysis: for domain prediction of megasynthases

antiSMASH: in silico identification, annotation and analysis of secondary metabolite biosynthetic gene clusters.

IMG/M: for annotation, analysis and distribution of microbial genome and microbiome datasets  

Bigscape-Corason: A computational framework to explore large-scale biosynthetic diversity

GENOME DEATABASES

E. coli genotypes-OpenWetWare: genotypes of commonly used E. coli Lab strains.

TOOLS FOR MOLECULAR BIOLOGY

NEB Tm caculator: for calculating Tm for PCR reactions

NEBioCalculator: for calculation of the amount of insert required for molecular cloning

OTHER RESOURCES

 

JOURNALS

 

©2019 by Zhu Lab.